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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ41E11_PFZ41E11, a Labrador Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ41E11_PFZ41E11

PFZ41E11_PFZ41E11 is a Labrador Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ41E11_PFZ41E11 in the atlas
About PFZ41E11_PFZ41E11

PFZ41E11_PFZ41E11 sits near the center of the Labrador Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ41E11_PFZ41E11's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ41E11_PFZ41E11's. Click any of them to keep exploring.

  1. PFZ5F05_PFZ5F05 Labrador Retriever 24.51
  2. PFZ1A05_PFZ1A05 Village Dog Peru Loreto 27.67
  3. HO9_HO9 Village Dog Honduras 28.15
  4. PFZ4A07_PFZ4A07 Labrador Retriever 29.07
  5. PFZ3F02_PFZ3F02 Village Dog Colombia 30.10
PFZ41E11_PFZ41E11's breed

PFZ41E11_PFZ41E11 sits in the Rottweiler cluster, with genome overlap to Labrador Retriever, and Golden Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Rottweiler 48%
  2. Labrador Retriever 38%
  3. Golden Retriever 14%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Labrador Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 C/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.702
y 0.709
z 5.759
PCA-256 distance from breed centroid
47.83
Outlier percentile in breed
5
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ41E11_PFZ41E11 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC12 z = -2.13
  • chr12:3,203,806 loading 0.0259
  • chr13:8,570,429 loading -0.0258
  • chr3:39,845,469 loading 0.0255
PC239 z = -2.11
  • chr26:2,885,742 loading 0.0312
  • chr11:18,600,601 loading 0.0306
  • chr1:62,634,942 loading 0.0302
PC230 z = -1.69
  • chr14:35,252,647 loading 0.0345
  • chr7:40,535,333 loading 0.0300
  • chr17:50,105,121 loading -0.0291
Ancestry reconstruction error: 0.74
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