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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ9F03_PFZ9F03, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ9F03_PFZ9F03

PFZ9F03_PFZ9F03 is a Golden Retriever from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ9F03_PFZ9F03 in the atlas
About PFZ9F03_PFZ9F03

PFZ9F03_PFZ9F03 is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
PFZ9F03_PFZ9F03's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ9F03_PFZ9F03's. Click any of them to keep exploring.

  1. PFZ9C04_PFZ9C04 Golden Retriever 25.82
  2. PFZ24F03_PFZ24F03 Golden Retriever 29.15
  3. PFZ40G06_PFZ40G06 Mix 29.43
  4. PFZ38C10_PFZ38C10 Golden Retriever 30.32
  5. PFZ44A06_PFZ44A06 Labrador Retriever 30.53
PFZ9F03_PFZ9F03's breed

PFZ9F03_PFZ9F03 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 70%
  2. Labrador Retriever 30%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.112
y 1.888
z 2.053
PCA-256 distance from breed centroid
42.91
Outlier percentile in breed
86
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ9F03_PFZ9F03 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC121 z = 2.40
  • chr1:99,506,167 loading 0.0408
  • chr15:22,270,589 loading -0.0399
  • chr15:22,844,988 loading -0.0387
PC173 z = -2.25
  • chr17:4,173,842 loading 0.0406
  • chr17:4,233,511 loading 0.0400
  • chr17:4,353,120 loading 0.0343
PC216 z = -1.94
  • chr6:57,387,289 loading 0.0303
  • chr14:13,904,420 loading -0.0294
  • chr30:3,709,721 loading 0.0293
Ancestry reconstruction error: 0.81
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