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CanVAS JenkinsWGS · Founder
Cosmic medallion portrait of BP_28016_BP_28016, a Berger Picard
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

BP_28016_BP_28016

BP_28016_BP_28016 is a Berger Picard from the JenkinsWGS research cohort. One of 14,478 dogs who built the atlas.

See BP_28016_BP_28016 in the atlas
About BP_28016_BP_28016
  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
BP_28016_BP_28016's nearest neighbors

The five dogs in the atlas whose genomes sit closest to BP_28016_BP_28016's. Click any of them to keep exploring.

  1. PFZ34G11_PFZ34G11 Berger Picard 13.89
  2. BPIC_BPIC_SEQ03 Berger Picard 42.93
  3. BPIC_BPIC_SEQ02 Berger Picard 43.92
  4. BPIC_BPIC_SEQ01 Berger Picard 44.06
  5. CPAT_Italy_CPAT_24532 Carolina Dog 47.65
BP_28016_BP_28016's breed

BP_28016_BP_28016 sits in the German Shepherd cluster, with genome overlap to Belgian Shepherd, Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. German Shepherd 55%
  2. Belgian Shepherd 21%
  3. Golden Retriever 13%
  4. Labrador Retriever 11%
Source

From the CanVAS (JenkinsWGS cohort) . Breed-page reference: Berger Picard.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/C
SMAD2 G/G
LCORL A/A
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 T/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 T/T
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.407
y 1.784
z 1.299
Top-3 principal components by |z|

The 3 PCs on which BP_28016_BP_28016 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC188 z = 6.08
  • chr7:21,167,050 loading 0.0346
  • chr25:32,919,094 loading 0.0335
  • chr7:21,698,587 loading 0.0335
PC173 z = 5.19
  • chr17:4,173,842 loading 0.0406
  • chr17:4,233,511 loading 0.0400
  • chr17:4,353,120 loading 0.0343
PC192 z = -4.60
  • chr25:28,817,053 loading 0.0428
  • chr25:4,418,784 loading 0.0393
  • chr25:26,660,651 loading 0.0386
Ancestry reconstruction error: 0.82
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