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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ10H04_PFZ10H04, a German Shorthaired Pointer
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the 14,478-dog atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ10H04_PFZ10H04

PFZ10H04_PFZ10H04 is a German Shorthaired Pointer from the Hayward2016 research cohort. One of 14,478 dogs who built the atlas.

See PFZ10H04_PFZ10H04 in the atlas
About PFZ10H04_PFZ10H04

PFZ10H04_PFZ10H04 sits near the center of the German Shorthaired Pointer cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ10H04_PFZ10H04's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ10H04_PFZ10H04's. Click any of them to keep exploring.

  1. PFZ10G04_PFZ10G04 German Shorthaired Pointer 17.55
  2. PFZ11B12_PFZ11B12 German Shorthaired Pointer 18.14
  3. PFZ11B05_PFZ11B05 German Shorthaired Pointer 18.77
  4. PFZ11F10_PFZ11F10 German Shorthaired Pointer 19.45
  5. PFZ10A05_PFZ10A05 German Shorthaired Pointer 19.59
PFZ10H04_PFZ10H04's breed

PFZ10H04_PFZ10H04 sits in the Vizsla cluster, with genome overlap to Golden Retriever, and Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Vizsla 49%
  2. Golden Retriever 30%
  3. Labrador Retriever 21%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: German Shorthaired Pointer.

Full genotype detail
click to expand

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL A/A
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 T/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 4.325
y 0.192
z 1.853
PCA-256 distance from breed centroid
12.79
Outlier percentile in breed
0
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ10H04_PFZ10H04 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC245 z = 3.10
  • chr5:79,585,745 loading 0.0313
  • chr14:5,105,246 loading 0.0300
  • chr24:4,166,647 loading -0.0289
PC192 z = 2.97
  • chr25:28,817,053 loading 0.0428
  • chr25:4,418,784 loading 0.0393
  • chr25:26,660,651 loading 0.0386
PC163 z = -2.60
  • chr34:1,919,265 loading 0.0369
  • chr34:2,440,834 loading -0.0368
  • chr34:1,346,136 loading 0.0366
Ancestry reconstruction error: 0.74
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